I barely dare to add to this thread anymore but.....ok here goes:
I got a fully repaired 6100 here now (from Thwocker's Tempest) and this is great so I can do some comparing steps instead of "flying blind".
Working on one Atarimania's deflection boards now and I first discovered the weirdest thing ever. I was going through all the transistors again , checking them for shorts. I wasn't getting any shorts but because I was now comparing the values between the good working deflection board and the "bad" one's, I suddenly had some different values on Q800 and Q801. To my amazement, there were NO shorts BUT the transistors showed the values "the other way around" ! This meant that they were PNP transistors instead of NPN's !!!
I checked the markings on them and looked up the datasheet and sure enough I was right !

These two transistors are in the spot killer circuit and I guess as long as there is no need for the spot killer to become activated, this wasn't much of a problem for the board to work. However, if such a situation would arise, the spot killer would for sure have failed and burned a nice hole into the tube (maybe that's why Atarimania's tube has such bad burns in the center ?)
Now...when I looked further both Q801 and Q802 had the same partnr. as Q800.....and the markings looked EXACTLY the same.
Also: I looked at the solderings, and they looked EXACTLY as dull (and as poorly soldered) as all the others on the board !!!
My conclusion: someone royally screwed up in the factory and grabbed the wrong transistors for Q801 and Q802 !!! It was just never noticed. Seeing the general quality of Wells Gardner (and it's obvious poor quality check system) I am actually not that much surprised at all !
The thing is: normally I just go over the board with the DVM in diode check setting, not caring much about NPN or PNP because you expect these to be correct, just focusing on shorts on transistors. Without the matching board to compare I would never have noticed !!! ANOTHER LESSON LEARNED, NEVER expect things to be as you expect them to be.
OK....so I replaced both transistors with the correct one's (2N3906 out, 2N3904 in)and tried it on the otherwise 100% working monitor.
Got picture, but....not entirely perfect. It looked like this when just started up:

However, the longer it was running, the more of the missing lines appeared....until I got almost a full picture (had to leave for a while then).
I need some freeze spray

The really weird thing is that the vertical lines are mostly fine.....but the horizontals are missing..... any way, it seems to be temperature related...and it is also on all colors exactly the same...